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Top 8 Python Biology Projects
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deepchem
Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology
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CodeRabbit
CodeRabbit: AI Code Reviews for Developers. Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
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OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
Project mention: Ask HN: How close are we to replace animal models with software? | news.ycombinator.com | 2024-10-01 -
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AlphaFold3
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch (by kyegomez)
followers, clicks? anyone who spends a few minutes browsing his repo will know he is a fraud. Here is an example:
https://github.com/kyegomez/AlphaFold3
most issues are people not able to run his code. These issues are closed. The repo has 700 stars.
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
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Python Biology discussion
Python Biology related posts
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Ask HN: How close are we to replace animal models with software?
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OpenWorm – creating a virtual organism in a computer
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The baffling intelligence of a single cell: The story of E. coli chemotaxis
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Money Bubble
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Mind-reading devices are revealing the brain's secrets
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Thousands of AI Authors on the Future of AI
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Discussion Thread
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A note from our sponsor - SaaSHub
www.saashub.com | 11 Feb 2025
Index
What are some of the best open-source Biology projects in Python? This list will help you:
# | Project | Stars |
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1 | deepchem | 5,714 |
2 | OpenWorm | 2,730 |
3 | ncbi-genome-download | 972 |
4 | AlphaFold3 | 773 |
5 | chemicalx | 715 |
6 | seagull | 177 |
7 | betse | 70 |
8 | biology | 13 |