Python Biology

Open-source Python projects categorized as Biology

Top 8 Python Biology Projects

  1. deepchem

    Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

  2. CodeRabbit

    CodeRabbit: AI Code Reviews for Developers. Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.

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  3. OpenWorm

    Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

    Project mention: Ask HN: How close are we to replace animal models with software? | news.ycombinator.com | 2024-10-01
  4. ncbi-genome-download

    Scripts to download genomes from the NCBI FTP servers

  5. AlphaFold3

    Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch (by kyegomez)

    Project mention: Swarm, a new agent framework by OpenAI | news.ycombinator.com | 2024-10-11

    followers, clicks? anyone who spends a few minutes browsing his repo will know he is a fraud. Here is an example:

    https://github.com/kyegomez/AlphaFold3

    most issues are people not able to run his code. These issues are closed. The repo has 700 stars.

  6. chemicalx

    A PyTorch and TorchDrug based deep learning library for drug pair scoring. (KDD 2022)

  7. seagull

    A Python Library for Conway's Game of Life

  8. betse

    BETSE — Bioelectric Tissue Simulation Engine

  9. SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
  10. biology

    genomics, biochemistry, biotechnology, cell biology, biophysics, ecology

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Index

What are some of the best open-source Biology projects in Python? This list will help you:

# Project Stars
1 deepchem 5,714
2 OpenWorm 2,730
3 ncbi-genome-download 972
4 AlphaFold3 773
5 chemicalx 715
6 seagull 177
7 betse 70
8 biology 13

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