Python bacteria

Open-source Python projects categorized as bacteria
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Bioinformatics Genomics Phylogenetics metagenomics Gwas
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Top 3 Python bacterium Projects

bacteria

  1. GTDBTk

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  2. SaaSHub

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  3. bakta

    Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  4. Scoary

    Pan-genome wide association studies

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Python bacteria related posts

  • Bacteria taxonomy determination!URGENT!

    3 projects | /r/bioinformatics | 11 Aug 2021

Index

What are some of the best open-source bacterium projects in Python? This list will help you:

# Project Stars
1 GTDBTk 494
2 bakta 467
3 Scoary 173

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