bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids (by oschwengers)

Bakta Alternatives

Similar projects and alternatives to bakta based on common topics and language

  • prokka

    :zap: :aquarius: Rapid prokaryotic genome annotation

  • FastANI

    Fast Whole-Genome Similarity (ANI) Estimation

  • WorkOS

    The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  • GTDBTk

    - bakta VS GTDBTk

    GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  • dfast_core

    DDBJ Fast Annotation and Submission Tool

  • metaGEM

    - bakta VS metaGEM

    :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

  • QUEEN

    - bakta VS QUEEN

    QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better bakta alternative or higher similarity.

bakta reviews and mentions

Posts with mentions or reviews of bakta. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-11.
  • orfs in DNA
    3 projects | /r/bioinformatics | 11 Oct 2022
    If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).

Stats

Basic bakta repo stats
1
383
8.5
21 days ago

oschwengers/bakta is an open source project licensed under GNU General Public License v3.0 only which is an OSI approved license.

The primary programming language of bakta is Python.

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