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Top 9 Python taxonomy Projects
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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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misp-taxonomies
Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.
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kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
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taxonomy4good
Taxonomy4Good: a sustainability lexicon that provides the freedom to create custom taxonomies in addition to listed ESG and Sustainability Standards taxonomies.
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CodeRabbit
CodeRabbit: AI Code Reviews for Developers. Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
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fideslang
Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.
NOTE:
The open source projects on this list are ordered by number of github stars.
The number of mentions indicates repo mentiontions in the last 12 Months or
since we started tracking (Dec 2020).
Python taxonomy discussion
Python taxonomy related posts
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Is there any way to easily create a docker image that has both python and R?
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Show HN: Answering to: 'What is the contrary of courage?'
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MAFFT Alignment taking longer than expected
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Bacteria taxonomy determination!URGENT!
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Taxopedia: Build taxonomic trees (cladograms) from Wikipedia-scraped data.
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Taxopedia: Build taxonomic trees (cladograms) from Wikipedia-scraped data.
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Taxopedia: Build taxonomic trees (cladograms) from Wikipedia-scraped data.
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A note from our sponsor - Scout Monitoring
www.scoutapm.com | 16 Oct 2024
Index
What are some of the best open-source taxonomy projects in Python? This list will help you:
| Project | Stars | |
|---|---|---|
| 1 | GTDBTk | 472 |
| 2 | misp-taxonomies | 260 |
| 3 | pyani | 193 |
| 4 | zeroshot_topics | 61 |
| 5 | kraken-biom | 47 |
| 6 | taxonomy4good | 29 |
| 7 | phantasm | 23 |
| 8 | taxopedia | 7 |
| 9 | fideslang | 2 |
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