Top 9 Python taxonomy Projects

GTDBTk

1 431 7.5 Python

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
misp-taxonomies

1 250 7.5 Python

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.
WorkOS

workos.com sponsored

The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
pyani

1 180 8.5 Python

Application and Python module for average nucleotide identity analyses of microbes.
zeroshot_topics

3 60 0.0 Python

Topic Inference with Zeroshot models
kraken-biom

1 43 0.0 Python

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
taxonomy4good

3 25 8.3 Python

Taxonomy4Good: a sustainability lexicon that provides the freedom to create custom taxonomies in addition to listed ESG and Sustainability Standards taxonomies.
phantasm

2 20 8.6 Python

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
taxopedia

4 7 0.0 Python

Taxonomic trees (cladograms) from Wikipedia-scraped data.
fideslang

2 1 7.2 Python

Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).