pyani

Application and Python module for average nucleotide identity analyses of microbes. (by widdowquinn)
Add to my DEV experience Bioinformatics average-nucleotide-identity taxonomy taxonomy-assignment Classification ani
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widdowquinn.github.io
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pyani reviews and mentions

Posts with mentions or reviews of pyani. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-20.
  • MAFFT Alignment taking longer than expected
    2 projects | /r/bioinformatics | 20 Oct 2022
    But to help you along, one would chop up the genomes into smaller bits to robustly handle potential re-arrangements. A classic tool to do so, is the MUMMER algorithm, which for your purpose is nicely implemented here: https://github.com/widdowquinn/pyani

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180
9.0
24 days ago

widdowquinn/pyani is an open source project licensed under MIT License which is an OSI approved license.

The primary programming language of pyani is Python.

Popular Comparisons

  1. pyani VS GTDBTk
  2. pyani VS phantasm
  3. pyani VS misp-taxonomies

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