Kraken-biom Alternatives
Similar projects and alternatives to kraken-biom
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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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SaaSHub
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kraken-biom reviews and mentions
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Differences between read based abundancy estimation programs? (metagenomics)
The issue is that after performing a taxonomic classification using kraken2, I want to create abundance tables regarding this taxonomic classification outputs. Some people have recommended me to use kraken--biom (https://github.com/smdabdoub/kraken-biom) and some others recommended me to use bracken (https://ccb.jhu.edu/software/bracken/index.shtml?t=manual).
Stats
Basic kraken-biom repo stats
1
43
0.0
about 2 years ago
smdabdoub/kraken-biom is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of kraken-biom is Python.
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