atlas

ATLAS - Three commands to start analyzing your metagenome data (by metagenome-atlas)
Review metagenomics Annotation Snakemake Assembly genomic-binning functional-annotation taxonomic-classifications
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metagenome-atlas.github.io
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atlas

  1. bioinformatics

    32 atlas VS bioinformatics

    Discontinued :microscope: Path to a free self-taught education in Bioinformatics!

  2. InfluxDB

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  3. eggnog-mapper

    1 atlas VS eggnog-mapper

    Fast genome-wide functional annotation through orthology assignment

  4. pypsa-eur

    3 atlas VS pypsa-eur

    PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System

  5. GraphBin2

    1 atlas VS GraphBin2

    ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs

  6. kraken-biom

    1 atlas VS kraken-biom

    Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

  7. biopython-coronavirus

    1 atlas VS biopython-coronavirus

    Biopython Jupyter Notebook tutorial to characterize a small genome

  8. zarp

    1 atlas VS zarp

    The Zavolab Automated RNA-seq Pipeline (by zavolanlab)

  9. Stream

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  10. chipseq-smk-pipeline

    2 atlas VS chipseq-smk-pipeline

    ChIP-Seq processing pipeline on snakemake

  11. UPIMAPI

    3 atlas VS UPIMAPI

    UniProt Id Mapping through API

  12. cookiecutter-snakemake-workflow

    1 atlas VS cookiecutter-snakemake-workflow

    A cookiecutter template for Snakemake workflows

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better atlas alternative or higher similarity.
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atlas reviews and mentions

Posts with mentions or reviews of atlas. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-23.

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6.6
2 months ago

metagenome-atlas/atlas is an open source project licensed under BSD 3-clause "New" or "Revised" License which is an OSI approved license.

The primary programming language of atlas is Python.

Popular Comparisons

  1. atlas VS eggnog-mapper
  2. atlas VS bioinformatics
  3. atlas VS pypsa-eur
  4. atlas VS GraphBin2
  5. atlas VS kraken-biom
  6. atlas VS zarp
  7. atlas VS biopython-coronavirus
  8. atlas VS chipseq-smk-pipeline
  9. atlas VS UPIMAPI
  10. atlas VS cookiecutter-snakemake-workflow

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