Python taxonomic-classification

Open-source Python projects categorized as taxonomic-classification
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Bioinformatics Python Education HacktoberFest Static Analysis
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Top 4 Python taxonomic-classification Projects

taxonomic-classification

  • sourmash

    Quickly search, compare, and analyze genomic and metagenomic data sets.

  • SaaSHub

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  • flextaxd

    FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

  • kraken-biom

    Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

  • paroxython

    Tag and recommend Python exercises based on algorithmic features

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Index

What are some of the best open-source taxonomic-classification projects in Python? This list will help you:

Project Stars
1 sourmash 482
2 flextaxd 65
3 kraken-biom 50
4 paroxython 34

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