MMseqs2 Alternatives

Similar projects and alternatives to MMseqs2

• kraken-biom

  1 43 0.0 Python MMseqs2 VS kraken-biom

  Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

• samtools

  3 1,549 8.6 C MMseqs2 VS samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• hh-suite

  2 498 0.0 C MMseqs2 VS hh-suite

  Remote protein homology detection suite.

  

• GTDBTk

  1 431 7.5 Python MMseqs2 VS GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  

• SqueezeMeta

  1 335 6.6 C MMseqs2 VS SqueezeMeta

  A complete pipeline for metagenomic analysis

• seqtk

  8 1,312 5.1 C MMseqs2 VS seqtk

  Toolkit for processing sequences in FASTA/Q formats

• htslib

  7 772 9.0 C MMseqs2 VS htslib

  C library for high-throughput sequencing data formats

  

• WorkOS

  workos.com featured

  The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.

  

• MethylDackel

  1 151 3.0 C MMseqs2 VS MethylDackel

  A (mostly) universal methylation extractor for BS-seq experiments.

• samtools

  0 10 0.0 C MMseqs2 VS samtools

  Discontinued [Moved to: https://github.com/ingolia/SamTools] (by ingolia)

• dada2

  1 449 4.3 R MMseqs2 VS dada2

  Accurate sample inference from amplicon data with single nucleotide resolution