MMseqs2 VS GTDBTk

Compare MMseqs2 vs GTDBTk and see what are their differences.

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
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MMseqs2 GTDBTk
5 1
1,532 495
2.0% 1.4%
9.2 6.7
4 days ago 2 months ago
C Python
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

MMseqs2

Posts with mentions or reviews of MMseqs2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-11-09.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing MMseqs2 and GTDBTk you can also consider the following projects:

htslib - C library for high-throughput sequencing data formats

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

samtools - Tools (written in C using htslib) for manipulating next-generation sequencing data

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

SqueezeMeta - A complete pipeline for metagenomic analysis

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

seqtk - Toolkit for processing sequences in FASTA/Q formats

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

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Nutrient – The #1 PDF SDK Library, trusted by 10K+ developers
Other PDF SDKs promise a lot - then break. Laggy scrolling, poor mobile UX, tons of bugs, and lack of support cost you endless frustrations. Nutrient’s SDK handles billion-page workloads - so you don’t have to debug PDFs. Used by ~1 billion end users in more than 150 different countries.
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