MMseqs2 VS samtools

Compare MMseqs2 vs samtools and see what are their differences.

samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data (by samtools)
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MMseqs2 samtools
5 3
1,532 1,673
2.0% 1.5%
9.2 8.7
4 days ago 15 days ago
C C
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

MMseqs2

Posts with mentions or reviews of MMseqs2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-11-09.

samtools

Posts with mentions or reviews of samtools. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-18.

What are some alternatives?

When comparing MMseqs2 and samtools you can also consider the following projects:

htslib - C library for high-throughput sequencing data formats

SqueezeMeta - A complete pipeline for metagenomic analysis

seqtk - Toolkit for processing sequences in FASTA/Q formats

libdna - ♥ Essential Functions for DNA Manipulation

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

libBigWig - A C library for handling bigWig files

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

bioinformatics-toolkit - A collection of bioinformatics algorithms

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

RNAlien - RNAlien - unsupervised RNA family model construction

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Other PDF SDKs promise a lot - then break. Laggy scrolling, poor mobile UX, tons of bugs, and lack of support cost you endless frustrations. Nutrient’s SDK handles billion-page workloads - so you don’t have to debug PDFs. Used by ~1 billion end users in more than 150 different countries.
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