Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →
Samtools Alternatives
Similar projects and alternatives to samtools
-
-
-
InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
-
-
-
-
-
bioinformatics-toolkit
A collection of bioinformatics algorithms
-
WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
-
-
BlastHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Blast REST webservice
-
-
EntrezHTTP
Haskell cabal libary for submission and result retrieval from the NCBI Entrez REST webservice
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better samtools alternative or higher similarity.
samtools reviews and mentions
Posts with mentions or reviews of samtools.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-18.
-
BWA MEM with merged paired-end reads and unmerged in the same run.
I don’t know about your first question, but for your second, use “bwa mem -p …” for smart pairing of an interleaved FASTQ/A with both paired end reads and singletons. BWA will recognize whether adjacent reads are paired if they have the same prefix (see here)
-
Show a Tanuki with Samtools!
In this post, I'm going to add the command tanuki to Samtools to display a ASCII art(AA) tanuki.
-
How do I know if I'm gonna get my module?
Quite a number of bioinformatics related tool that were written in C/C++, eg. (https://github.com/samtools/samtools). But there are also a lot of modern packages for Python / R now
-
A note from our sponsor - InfluxDB
www.influxdata.com | 18 Apr 2024
Stats
Basic samtools repo stats
3
1,543
8.4
6 days ago
samtools/samtools is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of samtools is C.
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com