MMseqs2 VS htslib

Compare MMseqs2 vs htslib and see what are their differences.

htslib

C library for high-throughput sequencing data formats (by samtools)
CodeRabbit: AI Code Reviews for Developers
Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
coderabbit.ai
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured
MMseqs2 htslib
5 7
1,527 828
1.6% 1.6%
9.2 8.7
15 days ago 10 days ago
C C
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

MMseqs2

Posts with mentions or reviews of MMseqs2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-11-09.

htslib

Posts with mentions or reviews of htslib. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-06-29.

What are some alternatives?

When comparing MMseqs2 and htslib you can also consider the following projects:

samtools - Tools (written in C using htslib) for manipulating next-generation sequencing data

SqueezeMeta - A complete pipeline for metagenomic analysis

aws-genomics-workflows - Genomics Workflows on AWS

seqtk - Toolkit for processing sequences in FASTA/Q formats

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

libdna - ♥ Essential Functions for DNA Manipulation

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

bwa-mem2 - The next version of bwa-mem

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

cyvcf2 - cython + htslib == fast VCF and BCF processing

CodeRabbit: AI Code Reviews for Developers
Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
coderabbit.ai
featured
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
featured

Did you know that C is
the 6th most popular programming language
based on number of references?