MMseqs2 VS hh-suite

Compare MMseqs2 vs hh-suite and see what are their differences.

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MMseqs2 hh-suite
5 2
1,527 556
1.6% 0.7%
9.2 0.0
15 days ago 3 months ago
C C
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

MMseqs2

Posts with mentions or reviews of MMseqs2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2024-11-09.

hh-suite

Posts with mentions or reviews of hh-suite. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-02.

What are some alternatives?

When comparing MMseqs2 and hh-suite you can also consider the following projects:

htslib - C library for high-throughput sequencing data formats

foldseek - Foldseek enables fast and sensitive comparisons of large structure sets.

samtools - Tools (written in C using htslib) for manipulating next-generation sequencing data

MethylDackel - A (mostly) universal methylation extractor for BS-seq experiments.

SqueezeMeta - A complete pipeline for metagenomic analysis

direct-io - Direct IO helpers for block devices and regular files on FreeBSD, Linux, macOS and Windows.

seqtk - Toolkit for processing sequences in FASTA/Q formats

cglm - 📽 Highly Optimized 2D / 3D Graphics Math (glm) for C

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

john - John the Ripper jumbo - advanced offline password cracker, which supports hundreds of hash and cipher types, and runs on many operating systems, CPUs, GPUs, and even some FPGAs

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

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