GTDBTk VS classify-genomes

Compare GTDBTk vs classify-genomes and see what are their differences.

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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classify-genomes

Classify a genome sequence according to the mOTUs/specI taxonomy (by AlessioMilanese)
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GTDBTk classify-genomes
1 1
494 7
2.8% -
6.7 0.0
about 2 months ago almost 3 years ago
Python Python
GNU General Public License v3.0 only -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

classify-genomes

Posts with mentions or reviews of classify-genomes. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing GTDBTk and classify-genomes you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

pyani - Application and Python module for average nucleotide identity analyses of microbes.

fideslang - Open-source description language for privacy to declare data types and data behaviors in your tech stack in order to simplify data privacy globally. Supports GDPR, CCPA, LGPD and ISO 19944.

Metabuli - Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

Scoary - Pan-genome wide association studies

veba - A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

GTDBTk vs kraken-biom classify-genomes vs CAT_pack GTDBTk vs bakta GTDBTk vs dada2 GTDBTk vs phantasm GTDBTk vs CAT_pack GTDBTk vs MMseqs2 GTDBTk vs pyani GTDBTk vs fideslang GTDBTk vs Metabuli GTDBTk vs Scoary GTDBTk vs veba
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