MethylDackel Alternatives
Similar projects and alternatives to MethylDackel
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InfluxDB
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SaaSHub
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The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better MethylDackel alternative or higher similarity.
MethylDackel reviews and mentions
Posts with mentions or reviews of MethylDackel.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-06-08.
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WGBS normalization methods inquiry
Anyway, I'm curious if there are methods used to normalize the data to account for the difference in sequencing depth. I've already employed random subsampling like they used in the EpiQC study to achieve a similar mean coverage across the board, but I'm curious if there are any other known methods which minimize information loss. For context, I won't be doing DML/DMR detection (I know these methods can take coverage into account when merging DMRs and performing statistical analyses), but rather tissue of origin estimation between sets. My data are per-CpG context bedGraph files from MethylDackel, but I have access to the per-Cytosine bedGraphs all the way up to the raw FASTQ files.
Stats
Basic MethylDackel repo stats
1
151
3.0
3 months ago
dpryan79/MethylDackel is an open source project licensed under MIT License which is an OSI approved license.
The primary programming language of MethylDackel is C.
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