Dada2 Alternatives
Similar projects and alternatives to dada2 based on common topics and language
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kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
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GTDBTk
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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MicrobiomeStat
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
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NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better dada2 alternative or higher similarity.
dada2 reviews and mentions
Posts with mentions or reviews of dada2.
We have used some of these posts to build our list of alternatives
and similar projects.
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Error model generation and subsequent steps in DADA2 pipeline for multiple sequencing runs
It is recommended to process each run separately (https://github.com/benjjneb/dada2/issues/1177). Each flow cell behaves differently, so the error model for one might not work well for another run. You can merge them together once you have your sequence table.
Stats
Basic dada2 repo stats
1
449
4.3
3 months ago
benjjneb/dada2 is an open source project licensed under GNU Lesser General Public License v3.0 only which is an OSI approved license.
The primary programming language of dada2 is R.
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