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dada2 discussion
dada2 reviews and mentions
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Error model generation and subsequent steps in DADA2 pipeline for multiple sequencing runs
It is recommended to process each run separately (https://github.com/benjjneb/dada2/issues/1177). Each flow cell behaves differently, so the error model for one might not work well for another run. You can merge them together once you have your sequence table.
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benjjneb/dada2 is an open source project licensed under GNU Lesser General Public License v3.0 only which is an OSI approved license.
The primary programming language of dada2 is R.
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