dada2 VS TCGAbiolinks

Compare dada2 vs TCGAbiolinks and see what are their differences.

dada2

Accurate sample inference from amplicon data with single nucleotide resolution (by benjjneb)
microbiome Bioinformatics bioconductor taxonomy amplicon metagenomics metabarcoding
Source Code
benjjneb.github.io
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TCGAbiolinks

TCGAbiolinks (by BioinformaticsFMRP)
integrative-analysis bioc R tcgabiolinks bioconductor gdc tcga tcga-data
Source Code
bioconductor.org
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dada2 TCGAbiolinks
1 2
453 277
- 1.8%
4.3 4.6
4 months ago about 1 month ago
R R
GNU Lesser General Public License v3.0 only -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

dada2

Posts with mentions or reviews of dada2. We have used some of these posts to build our list of alternatives and similar projects.

TCGAbiolinks

Posts with mentions or reviews of TCGAbiolinks. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing dada2 and TCGAbiolinks you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

awesome-R - A curated list of awesome R packages, frameworks and software.

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

ggplot2 - An implementation of the Grammar of Graphics in R

dada2 vs kraken-biom TCGAbiolinks vs bambu dada2 vs GTDBTk TCGAbiolinks vs maftools dada2 vs rBLAST TCGAbiolinks vs rBLAST dada2 vs MicrobiomeStat TCGAbiolinks vs awesome-R dada2 vs MMseqs2 TCGAbiolinks vs ggplot2