TCGAbiolinks VS bambu

Compare TCGAbiolinks vs bambu and see what are their differences.

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TCGAbiolinks bambu
2 1
276 163
2.9% 3.7%
4.6 5.6
19 days ago 21 days ago
R R
- GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

TCGAbiolinks

Posts with mentions or reviews of TCGAbiolinks. We have used some of these posts to build our list of alternatives and similar projects.

bambu

Posts with mentions or reviews of bambu. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing TCGAbiolinks and bambu you can also consider the following projects:

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

drugfindR - Repository holding the code for the drugfindR R package

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

rnaseq - RNA-seq analyses.

awesome-R - A curated list of awesome R packages, frameworks and software.

ggplot2 - An implementation of the Grammar of Graphics in R

clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

cosmosR - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.