bambu VS rnaseq

Compare bambu vs rnaseq and see what are their differences.

bambu

Reference-guided transcript discovery and quantification for long read RNA-Seq data (by GoekeLab)
bambu transcript-reconstruction transcript-quantification long-reads nanopore-sequencing Transcriptomics rna-seq-analysis bioconductor R nanopore rna-seq
Source Code
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rnaseq

RNA-seq analyses. (by davetang)
rna-seq-pipelines gene-quantification rna-seq star-rsem hisat2
Source Code
davetang.org
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bambu rnaseq
1 1
163 6
3.7% -
5.6 3.7
21 days ago 4 days ago
R Shell
GNU General Public License v3.0 only -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bambu

Posts with mentions or reviews of bambu. We have used some of these posts to build our list of alternatives and similar projects.

rnaseq

Posts with mentions or reviews of rnaseq. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing bambu and rnaseq you can also consider the following projects:

rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.

salmon - 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

drugfindR - Repository holding the code for the drugfindR R package

PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

TCGAbiolinks - TCGAbiolinks

rnaseqc - Fast, efficient RNA-Seq metrics for quality control and process optimization

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

RNA-seq-analysis - RNAseq analysis notes from Ming Tang

clustifyr - Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

mixcr - MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.

bambu vs rna-seq-kallisto-sleuth rnaseq vs salmon bambu vs drugfindR rnaseq vs PyDESeq2 bambu vs TCGAbiolinks rnaseq vs rnaseqc bambu vs rBLAST rnaseq vs RNA-seq-analysis bambu vs clustifyr rnaseq vs mixcr