bambu
Reference-guided transcript discovery and quantification for long read RNA-Seq data (by GoekeLab)
clustifyr
Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets (by rnabioco)
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| bambu | clustifyr | |
|---|---|---|
| 1 | 1 | |
| 163 | 101 | |
| 3.7% | 4.0% | |
| 5.6 | 4.9 | |
| 21 days ago | 7 days ago | |
| R | R | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bambu
Posts with mentions or reviews of bambu.
We have used some of these posts to build our list of alternatives
and similar projects.
clustifyr
Posts with mentions or reviews of clustifyr.
We have used some of these posts to build our list of alternatives
and similar projects.
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Compare specific clusters across condition in scRNA-seq
You can use the package clustifyr in r with seurat and use a known data set that has already been identified. It will give you a correlation matrix to define how close your “unknown” cluster is to a already identified cluster. However this all depends on if you have a good reference data set clustifyr
What are some alternatives?
When comparing bambu and clustifyr you can also consider the following projects:
rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
drugfindR - Repository holding the code for the drugfindR R package
TCGAbiolinks - TCGAbiolinks
rnaseq - RNA-seq analyses.
rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package
cosmosR - COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data sets.