R single-cell-rna-seq

Open-source R projects categorized as single-cell-rna-seq
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Topics: single-cell-genomics single-cell-analysis human-cell-atlas cran Clusters
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Top 3 R single-cell-rna-seq Projects

  • seurat

    R toolkit for single cell genomics

    • Project mention: Help with spatial transcriptomic analysis | /r/bioinformatics | 2023-12-09

  • clustifyr

    Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

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  • single-cell-transcriptomics-app

    A R Shiny App for single-cell analysis

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

R single-cell-rna-seq related posts

  • Help with spatial transcriptomic analysis

    1 project | /r/bioinformatics | 9 Dec 2023

  • Seurat installation issues on macbook (for RNA-seq analysis)

    1 project | /r/bioinformatics | 7 Dec 2023

  • Does Seurat provide any advantage for UMAPs over other packages (e.g. uwot)?

    1 project | /r/bioinformatics | 8 Mar 2023

  • Weird Phishing attempt on GitHub

    1 project | dev.to | 29 Dec 2022

  • I feel like nobody knows anything about what they're doing (including me) and it's making me think twice about working in bioinformatics. Is it a bioinformatics problem or is it a lab problem?

    1 project | /r/bioinformatics | 7 Dec 2022

  • Use of Seurat integrated assay

    2 projects | /r/bioinformatics | 6 Feb 2022

  • Extract Log-Normalised Data From a Seurat Object

    1 project | /r/bioinformatics | 6 Feb 2022
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    www.influxdata.com | 2 May 2024
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Index

What are some of the best open-source single-cell-rna-seq projects in R? This list will help you:

Project Stars
1 seurat 2,125
2 clustifyr 101
3 single-cell-transcriptomics-app 0

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