rnaseq
RNA-seq-analysis
rnaseq | RNA-seq-analysis | |
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1 | 1 | |
6 | 840 | |
- | - | |
3.7 | 0.0 | |
20 days ago | over 2 years ago | |
Shell | Python | |
- | MIT License |
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rnaseq
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RNA seq bam files help?
A place to start https://github.com/davetang/rnaseq
RNA-seq-analysis
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Looking for advice regarding R-programming and data analysis for immunology/biology projects
One github user crazyhottommy has repositories that cover multiple tools related to several sequencing experiments also including RNA-seq. Really good stuff https://github.com/crazyhottommy/RNA-seq-analysis
What are some alternatives?
salmon - 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
COVID-19-RNA-Seq-datasets - A repository for sharing information on available COVID-19 RNA-Seq datasets
PyDESeq2 - A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
pypsa-eur - PyPSA-Eur: A Sector-Coupled Open Optimisation Model of the European Energy System
rnaseqc - Fast, efficient RNA-Seq metrics for quality control and process optimization
zarp - The Zavolab Automated RNA-seq Pipeline
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
R-graph-gallery - A website that displays hundreds of R charts with their code
mixcr - MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
GermlineMutationCalling - An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
TPMCalculator - TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files