TCGAbiolinks VS maftools

Compare TCGAbiolinks vs maftools and see what are their differences.

TCGAbiolinks

TCGAbiolinks (by BioinformaticsFMRP)
integrative-analysis bioc R tcgabiolinks bioconductor gdc tcga tcga-data
Source Code
bioconductor.org
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maftools

Summarize, Analyze and Visualize MAF files from TCGA or in-house studies. (by PoisonAlien)
maf-files cancer-genomics cancer-genome-atlas tcga Genomics Bioinformatics R
Source Code
bioconductor.org
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TCGAbiolinks maftools
2 3
276 415
2.9% -
4.6 6.6
19 days ago 24 days ago
R R
- MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

TCGAbiolinks

Posts with mentions or reviews of TCGAbiolinks. We have used some of these posts to build our list of alternatives and similar projects.

maftools

Posts with mentions or reviews of maftools. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-01-09.
  • MUtation data visulization in R
    1 project | /r/bioinformatics | 20 Jul 2021
    Have you tried to debug the error? The maftools repo on GitHub has an active issues section.
  • Function to change source code?
    2 projects | /r/Rlanguage | 9 Jan 2021
    Are you able to provide your R script with the data (or a small recreation) that you're using? That would be helpful in recreating what you're seeing and help determine if what's going on. You can always submit a (minimal, reproducible) example and explanation to the maintainers on the issues page -- which they may be able to help you diagnoses.

What are some alternatives?

When comparing TCGAbiolinks and maftools you can also consider the following projects:

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

TeamTeri - Bioinformatics on GCP, AWS or Azure

bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data

rhmmer - Simple R utilities for working with HMMER

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

go-feature-flag - GO Feature Flag is a simple, complete and lightweight self-hosted feature flag solution 100% Open Source. 🎛️

awesome-R - A curated list of awesome R packages, frameworks and software.

getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science

ggplot2 - An implementation of the Grammar of Graphics in R

drugfindR - Repository holding the code for the drugfindR R package

TCGAbiolinks vs dada2 maftools vs TeamTeri TCGAbiolinks vs bambu maftools vs rhmmer TCGAbiolinks vs rBLAST maftools vs go-feature-flag TCGAbiolinks vs awesome-R maftools vs getting-started-with-genomics-tools-and-resources TCGAbiolinks vs ggplot2 maftools vs drugfindR