R Genomics

Open-source R projects categorized as Genomics | Edit details

R Genomic Projects

  • GitHub repo orthologr

    Genome wide orthology inference and dNdS estimation

    Project mention: Calculating Ka/Ks (dN/dS) ratio recommendations? | reddit.com/r/bioinformatics | 2021-04-18

    https://github.com/drostlab/orthologr this will help

  • GitHub repo ermineR

    R wrapper for ermineJ

    Project mention: Gene ontology of differentially expressed genes in R | reddit.com/r/bioinformatics | 2021-08-04

    I would recommend ermineJ as thier statistical approach is better suited to overcome issues with how GO is constructed and the imbalance in the sizes of GO terms (sizes meaning the number of genes assigned). They have a graphical, command line interface and an R package link

  • Scout APM

    Scout APM: A developer's best friend. Try free for 14-days. Scout APM uses tracing logic that ties bottlenecks to source code so you know the exact line of code causing performance issues and can get back to building a great product faster.

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020). The latest post mention was on 2021-08-04.

R Genomics related posts

Index

Project Stars
1 orthologr 49
2 ermineR 4
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