R Bioinformatics

Open-source R projects categorized as Bioinformatics
Edit details
R protein-sequences bioinformatics-pipeline Genomics sequence-analysis
AppSignal knows why the f*#k it crashed.
Stop vibe-debugging. Every exception, every backtrace, grouped so you see patterns, not noise.
www.appsignal.com
featured

Top 13 R Bioinformatic Projects

R logo
Bioinformatics

  1. dada2

    Accurate sample inference from amplicon data with single nucleotide resolution

  2. AppSignal

    AppSignal knows why the f*#k it crashed. Stop vibe-debugging. Every exception, every backtrace, grouped so you see patterns, not noise.

    AppSignal logo

  3. maftools

    Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  4. rBLAST

    Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

  5. Peptides

    An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.

  6. protr

    🧬 Toolkit for generating various numerical features of protein sequences

  7. covid19-event-risk-planner

    COVID19 risk planner R-Shiny application

  8. chromatographR

    Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

  9. SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo

  10. biomisc_R

    command line bioinformatic scripts written in R

  11. rhmmer

    Simple R utilities for working with HMMER

  12. drugfindR

    Repository holding the code for the drugfindR R package

  13. Baltica

    Baltica: integrated differential junction usage

  14. ermineR

    R wrapper for ermineJ

  15. seqinr

    Biological sequences retrieval and analysis

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

R Bioinformatics discussion

Log in or Post with

R Bioinformatics related posts

  • protr VS seqinr - a user suggested alternative

    2 projects | 5 May 2024

  • Washington state - no case updates since DOH doesn't publish on Tuesdays, Thursdays and weekends and holidays - 10/3/2022 Case Updates

    1 project | /r/CoronavirusWA | 4 Oct 2022

  • Caught Covid at the National 9/24/22

    1 project | /r/rva | 1 Oct 2022

  • Monthly Megathread for COVID-19 - August 2022

    1 project | /r/weddingplanning | 31 Jul 2022

  • Us this week

    1 project | /r/UniversityOfHouston | 17 Jul 2022

  • New York City reaches medium risk alert level for COVID

    1 project | /r/Coronavirus | 3 May 2022

  • PSA: COVID still widespread in St. Louis despite minuscule reported cases

    1 project | /r/StLouis | 27 Apr 2022
  • A note from our sponsor - AppSignal
    www.appsignal.com | 7 Aug 2026
    Stop vibe-debugging. Every exception, every backtrace, grouped so you see patterns, not noise. Learn more →

Index

What are some of the best open-source Bioinformatic projects in R? This list will help you:

# Project Stars
1 dada2 554
2 maftools 499
3 rBLAST 114
4 Peptides 102
5 protr 53
6 covid19-event-risk-planner 46
7 chromatographR 26
8 biomisc_R 24
9 rhmmer 19
10 drugfindR 13
11 Baltica 10
12 ermineR 6
13 seqinr 5

Sponsored
AppSignal knows why the f*#k it crashed.
Stop vibe-debugging. Every exception, every backtrace, grouped so you see patterns, not noise.
www.appsignal.com
Loading...