dada2
Accurate sample inference from amplicon data with single nucleotide resolution (by benjjneb)
rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package (by mhahsler)
| dada2 | rBLAST | |
|---|---|---|
| 1 | 1 | |
| 453 | 101 | |
| - | - | |
| 4.3 | 7.2 | |
| 4 months ago | 16 days ago | |
| R | R | |
| GNU Lesser General Public License v3.0 only | GNU General Public License v3.0 only |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
dada2
Posts with mentions or reviews of dada2.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Error model generation and subsequent steps in DADA2 pipeline for multiple sequencing runs
It is recommended to process each run separately (https://github.com/benjjneb/dada2/issues/1177). Each flow cell behaves differently, so the error model for one might not work well for another run. You can merge them together once you have your sequence table.
rBLAST
Posts with mentions or reviews of rBLAST.
We have used some of these posts to build our list of alternatives
and similar projects.
What are some alternatives?
When comparing dada2 and rBLAST you can also consider the following projects:
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
TCGAbiolinks - TCGAbiolinks
rhmmer - Simple R utilities for working with HMMER
MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite