dada2 VS rBLAST

Compare dada2 vs rBLAST and see what are their differences.

dada2

Accurate sample inference from amplicon data with single nucleotide resolution (by benjjneb)

rBLAST

Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package (by mhahsler)
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dada2 rBLAST
1 1
484 106
1.0% 0.9%
6.7 5.8
10 days ago about 1 month ago
R R
GNU Lesser General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

dada2

Posts with mentions or reviews of dada2. We have used some of these posts to build our list of alternatives and similar projects.

rBLAST

Posts with mentions or reviews of rBLAST. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing dada2 and rBLAST you can also consider the following projects:

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

rhmmer - Simple R utilities for working with HMMER

TCGAbiolinks - TCGAbiolinks

bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data

MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

seqinr - Biological sequences retrieval and analysis

Metabuli - Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.

flextaxd - FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

bracken_plot - A Shiny app for taxonomic abundance visualization

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Nutrient - The #1 PDF SDK Library
Bad PDFs = bad UX. Slow load times, broken annotations, clunky UX frustrates users. Nutrient’s PDF SDKs gives seamless document experiences, fast rendering, annotations, real-time collaboration, 100+ features. Used by 10K+ devs, serving ~half a billion users worldwide. Explore the SDK for free.
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