rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package (by mhahsler)
TCGAbiolinks
TCGAbiolinks (by BioinformaticsFMRP)
| rBLAST | TCGAbiolinks | |
|---|---|---|
| 1 | 2 | |
| 100 | 275 | |
| - | 1.1% | |
| 7.2 | 4.6 | |
| 5 days ago | 25 days ago | |
| R | R | |
| GNU General Public License v3.0 only | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rBLAST
Posts with mentions or reviews of rBLAST.
We have used some of these posts to build our list of alternatives
and similar projects.
TCGAbiolinks
Posts with mentions or reviews of TCGAbiolinks.
We have used some of these posts to build our list of alternatives
and similar projects.
-
TCGAbiolinks package in R
Perhaps you have a similar issue to this post: https://github.com/BioinformaticsFMRP/TCGAbiolinks/issues/354. They resolved it by converting their Ensemble IDs to Symbol IDs instead for the plot to work
-
Desparate help post regarding the Bioconductor package TCGAbiolinksGUI
Looking at the github page https://github.com/BioinformaticsFMRP/TCGAbiolinks
What are some alternatives?
When comparing rBLAST and TCGAbiolinks you can also consider the following projects:
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
dada2 - Accurate sample inference from amplicon data with single nucleotide resolution
rhmmer - Simple R utilities for working with HMMER
maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
awesome-R - A curated list of awesome R packages, frameworks and software.
ggplot2 - An implementation of the Grammar of Graphics in R