rBLAST
Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package (by mhahsler)
rhmmer
Simple R utilities for working with HMMER (by arendsee)
| rBLAST | rhmmer | |
|---|---|---|
| 1 | 1 | |
| 100 | 14 | |
| - | - | |
| 7.2 | 0.0 | |
| 5 days ago | over 1 year ago | |
| R | R | |
| GNU General Public License v3.0 only | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
rBLAST
Posts with mentions or reviews of rBLAST.
We have used some of these posts to build our list of alternatives
and similar projects.
rhmmer
Posts with mentions or reviews of rhmmer.
We have used some of these posts to build our list of alternatives
and similar projects.
-
how to work with a hmmsearch table output?
I use this R package in Rstudio; https://github.com/arendsee/rhmmer
What are some alternatives?
When comparing rBLAST and rhmmer you can also consider the following projects:
bambu - Reference-guided transcript discovery and quantification for long read RNA-Seq data
Baltica - Baltica: integrated differential junction usage
TCGAbiolinks - TCGAbiolinks
heatitup
dada2 - Accurate sample inference from amplicon data with single nucleotide resolution
biomisc_R - command line bioinformatic scripts written in R
maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
ermineR - R wrapper for ermineJ
bio-sequence