dada2 VS MicrobiomeStat

Compare dada2 vs MicrobiomeStat and see what are their differences.

dada2

Accurate sample inference from amplicon data with single nucleotide resolution (by benjjneb)
microbiome Bioinformatics bioconductor taxonomy amplicon metagenomics metabarcoding
Source Code
benjjneb.github.io
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MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat (by cafferychen777)
16s-rrna amplicon-sequencing dada2 longitudinal-data metagenomes metagenomic-analysis microbiome microbiome-analysis microbiome-data phyloseq qiime2 Statistics Visualization
Source Code
microbiomestat.wiki
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dada2 MicrobiomeStat
1 1
453 24
- -
4.3 9.7
4 months ago 7 days ago
R R
GNU Lesser General Public License v3.0 only -
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dada2

Posts with mentions or reviews of dada2. We have used some of these posts to build our list of alternatives and similar projects.

MicrobiomeStat

Posts with mentions or reviews of MicrobiomeStat. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing dada2 and MicrobiomeStat you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

lmtp - :package: Non-parametric Causal Effects Based on Modified Treatment Policies :crystal_ball:

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

sjPlot - sjPlot - Data Visualization for Statistics in Social Science

TCGAbiolinks - TCGAbiolinks

empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis

rBLAST - Interface for the Basic Local Alignment Search Tool (BLAST) - R-Package

tableone - R package to create "Table 1", description of baseline characteristics with or without propensity score weighting

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

easystats - :milky_way: The R easystats-project

renjin - JVM-based interpreter for the R language for the statistical analysis.

dada2 vs kraken-biom MicrobiomeStat vs lmtp dada2 vs GTDBTk MicrobiomeStat vs sjPlot dada2 vs TCGAbiolinks MicrobiomeStat vs empress dada2 vs rBLAST MicrobiomeStat vs tableone dada2 vs MMseqs2 MicrobiomeStat vs easystats MicrobiomeStat vs renjin