MAFFT Alignment taking longer than expected

• pyani

  1 181 9.0 Python

  Application and Python module for average nucleotide identity analyses of microbes.

But to help you along, one would chop up the genomes into smaller bits to robustly handle potential re-arrangements. A classic tool to do so, is the MUMMER algorithm, which for your purpose is nicely implemented here: https://github.com/widdowquinn/pyani

• tutorials

  1 78 10.0 Python

  In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun! (by microgenomics)

  

Just saw that you wanted to build a tree - by far the easiest in your case is to use roary (https://sanger-pathogens.github.io/Roary/) . Just follow the tutorial her : https://github.com/microgenomics/tutorials/blob/master/pangenome.md

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

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