pyani VS phantasm

Compare pyani vs phantasm and see what are their differences.

pyani

Application and Python module for average nucleotide identity analyses of microbes. (by widdowquinn)
Bioinformatics average-nucleotide-identity taxonomy taxonomy-assignment Classification ani
Source Code
widdowquinn.github.io
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phantasm

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)
Bioinformatics phylogenomics taxonomy microbiology
Source Code
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pyani phantasm
1 2
181 20
- -
9.0 8.6
about 1 month ago 6 months ago
Python Python
MIT License MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

pyani

Posts with mentions or reviews of pyani. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-20.
  • MAFFT Alignment taking longer than expected
    2 projects | /r/bioinformatics | 20 Oct 2022
    But to help you along, one would chop up the genomes into smaller bits to robustly handle potential re-arrangements. A classic tool to do so, is the MUMMER algorithm, which for your purpose is nicely implemented here: https://github.com/widdowquinn/pyani

phantasm

Posts with mentions or reviews of phantasm. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-02.

What are some alternatives?

When comparing pyani and phantasm you can also consider the following projects:

GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

drep - Rapid comparison and dereplication of genomes

misp-taxonomies - Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

pyani vs GTDBTk phantasm vs drep pyani vs misp-taxonomies phantasm vs GTDBTk phantasm vs misp-taxonomies