phantasm VS GTDBTk

Compare phantasm vs GTDBTk and see what are their differences.

phantasm

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes (by dr-joe-wirth)
Bioinformatics phylogenomics taxonomy microbiology
Source Code
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GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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phantasm GTDBTk
2 1
20 437
- 5.3%
8.6 7.5
6 months ago 28 days ago
Python Python
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
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phantasm

Posts with mentions or reviews of phantasm. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-02.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing phantasm and GTDBTk you can also consider the following projects:

drep - Rapid comparison and dereplication of genomes

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

misp-taxonomies - Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

pyani - Application and Python module for average nucleotide identity analyses of microbes.

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

phantasm vs drep GTDBTk vs kraken-biom phantasm vs misp-taxonomies GTDBTk vs CAT_pack phantasm vs pyani GTDBTk vs MMseqs2 GTDBTk vs dada2 GTDBTk vs classify-genomes GTDBTk vs bakta GTDBTk vs pyani