GTDBTk VS CAT_pack

Compare GTDBTk vs CAT_pack and see what are their differences.

GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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CAT_pack

CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes (by MGXlab)
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GTDBTk CAT_pack
1 1
435 162
4.4% 8.1%
7.5 8.5
16 days ago 2 days ago
Python Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

CAT_pack

Posts with mentions or reviews of CAT_pack. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing GTDBTk and CAT_pack you can also consider the following projects:

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

pyani - Application and Python module for average nucleotide identity analyses of microbes.

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

GTDBTk vs kraken-biom GTDBTk vs MMseqs2 GTDBTk vs dada2 GTDBTk vs classify-genomes GTDBTk vs bakta GTDBTk vs pyani GTDBTk vs phantasm