bakta VS GTDBTk

Compare bakta vs GTDBTk and see what are their differences.

bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids (by oschwengers)
Bioinformatics microbial-genomics genome-annotation bacteria bacterial-genomes plasmids metagenome-assembled-genomes Annotation mag
Source Code
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GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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bakta GTDBTk
1 1
389 431
- 6.3%
8.5 7.5
about 2 months ago 6 days ago
Python Python
GNU General Public License v3.0 only GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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bakta

Posts with mentions or reviews of bakta. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-11.
  • orfs in DNA
    3 projects | /r/bioinformatics | 11 Oct 2022
    If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing bakta and GTDBTk you can also consider the following projects:

prokka - :zap: :aquarius: Rapid prokaryotic genome annotation

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

FastANI - Fast Whole-Genome Similarity (ANI) Estimation

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

dfast_core - DDBJ Fast Annotation and Submission Tool

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

QUEEN - QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

pyani - Application and Python module for average nucleotide identity analyses of microbes.

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

bakta vs prokka GTDBTk vs kraken-biom bakta vs FastANI GTDBTk vs CAT_pack bakta vs metaGEM GTDBTk vs MMseqs2 bakta vs dfast_core GTDBTk vs dada2 bakta vs QUEEN GTDBTk vs classify-genomes GTDBTk vs pyani GTDBTk vs phantasm