Python metagenome-assembled-genomes

Open-source Python projects categorized as metagenome-assembled-genomes
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Topics: Bioinformatics Snakemake metagenomics microbial-genomics computational-biology
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Python metagenome-assembled-genome Projects

  • bakta

    Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  • metaGEM

    :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

    • Project mention: Metagenomic samples analysis: From taxonomic classification to reads mapping | /r/bioinformatics | 2023-06-09

    Maybe this workflow will be interesting to you: it assembles metagenomes, generates bins, and also creates metabolic models for predicting interactions within microbiomes 💎 https://github.com/franciscozorrilla/metaGEM

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 bakta 389
2 metaGEM 165

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