bakta
FastANI
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bakta | FastANI | |
---|---|---|
1 | 1 | |
389 | 344 | |
- | 1.2% | |
8.5 | 3.7 | |
about 2 months ago | 4 months ago | |
Python | C++ | |
GNU General Public License v3.0 only | Apache License 2.0 |
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bakta
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orfs in DNA
If you need more accurate ORF(CDS) prediction including functional annotation, I recommend using CLI tools such as prokka, bakta, or DFAST (DFAST is also available in a web version).
FastANI
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awesome-genome-visualization - my futile attempt to catalog all sorts of genome visualization tools (currently at 286 tools with screenshots now!)
FastANI (https://github.com/ParBLiSS/FastANI)
What are some alternatives?
prokka - :zap: :aquarius: Rapid prokaryotic genome annotation
pyGenomeViz - A genome visualization python package for comparative genomics
GTDBTk - GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
awesome-genome-visualization - A list of interesting genome browser or genome-browser-like implementations
metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
dfast_core - DDBJ Fast Annotation and Submission Tool
QUEEN - QUEEN: a framework to generate quinable and efficiently editable nucleotide sequence resources