taxopedia VS GTDBTk

Compare taxopedia vs GTDBTk and see what are their differences.

taxopedia

Taxonomic trees (cladograms) from Wikipedia-scraped data. (by shanedrabing)
taxonomic-trees taxonomy Wikipedia wikipedia-scraper cladogram Phylogenetics phylogenetic-trees
Source Code
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GTDBTk

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes. (by Ecogenomics)
taxonomy species-assignments Phylogenetics archaea bacteria nomenclature Bioinformatics metagenomics
Source Code
ecogenomics.github.io
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taxopedia GTDBTk
4 1
7 433
- 4.4%
0.0 7.5
over 2 years ago 12 days ago
Python Python
MIT License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

taxopedia

Posts with mentions or reviews of taxopedia. We have used some of these posts to build our list of alternatives and similar projects.

GTDBTk

Posts with mentions or reviews of GTDBTk. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-08-11.

What are some alternatives?

When comparing taxopedia and GTDBTk you can also consider the following projects:

graphlan - High-quality circular representations of taxonomic and phylogenetic trees

kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

CAT_pack - CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes

ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

MMseqs2 - MMseqs2: ultra fast and sensitive search and clustering suite

dada2 - Accurate sample inference from amplicon data with single nucleotide resolution

classify-genomes - Classify a genome sequence according to the mOTUs/specI taxonomy

bakta - Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

pyani - Application and Python module for average nucleotide identity analyses of microbes.

phantasm - PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

taxopedia vs graphlan GTDBTk vs kraken-biom taxopedia vs kraken-biom GTDBTk vs CAT_pack taxopedia vs ielex-data-and-tree GTDBTk vs MMseqs2 GTDBTk vs dada2 GTDBTk vs classify-genomes GTDBTk vs bakta GTDBTk vs pyani GTDBTk vs phantasm