Python phylogenetic-trees

Open-source Python projects categorized as phylogenetic-trees
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Python Matplotlib Visualization Tools Phylogenetics
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Top 6 Python phylogenetic-tree Projects

phylogenetic-trees

  • pyCirclize

    Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

    Project mention: Circular Data Visualization in Python | news.ycombinator.com | 2024-07-09

  • SaaSHub

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  • pyCircos

    python Circos

  • phylophlan

    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

  • graphlan

    High-quality circular representations of taxonomic and phylogenetic trees

  • taxopedia

    Taxonomic trees (cladograms) from Wikipedia-scraped data.

  • ielex-data-and-tree

    Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Python phylogenetic-trees related posts

  • PhyloPhlAN Tutorial?

    2 projects | /r/bioinformatics | 16 Feb 2023

  • How would one code a graphic, chronogramatic display, of a timeline in concentric circles, instead of linear parallels? Alternately, a spiral, with "phase" giving "day and month"?

    1 project | /r/learnpython | 31 Jul 2021

Index

What are some of the best open-source phylogenetic-tree projects in Python? This list will help you:

Project Stars
1 pyCirclize 775
2 pyCircos 341
3 phylophlan 128
4 graphlan 88
5 taxopedia 7
6 ielex-data-and-tree 6

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