taxopedia
Taxonomic trees (cladograms) from Wikipedia-scraped data. (by shanedrabing)
graphlan
High-quality circular representations of taxonomic and phylogenetic trees (by biobakery)
| taxopedia | graphlan | |
|---|---|---|
| 4 | 1 | |
| 8 | 102 | |
| - | - | |
| 0.0 | 3.0 | |
| over 3 years ago | 11 months ago | |
| Python | Python | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
taxopedia
Posts with mentions or reviews of taxopedia.
We have used some of these posts to build our list of alternatives
and similar projects.
graphlan
Posts with mentions or reviews of graphlan.
We have used some of these posts to build our list of alternatives
and similar projects.
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How would one code a graphic, chronogramatic display, of a timeline in concentric circles, instead of linear parallels? Alternately, a spiral, with "phase" giving "day and month"?
In fact, the more I think about it, the more I can see diagrams that it would make some amount of sense to wrap around in circles, flowing from a "core" to an "outside". Exergy diagrams, for example (Sankey, but wrapped around). Certain hierarchies/dendograms, we do talk a lot about "the inner circle" and the "center of power" as much as "the top rung" (this is commonly done with taxonomies, I understand). Growth phases, accident fallouts... but those are basically timelines too.
What are some alternatives?
When comparing taxopedia and graphlan you can also consider the following projects:
kraken-biom - Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
Wikipedia-API - Python wrapper for Wikipedia
python-mini-projects - A collection of simple python mini projects to enhance your python skills
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
pyCircos - python Circos