Python biobakery

Open-source Python projects categorized as biobakery
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Topics: Tools phylogenetic-trees Python kneaddata bowtie2
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Top 4 Python biobakery Projects

  • phylophlan

    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

  • kneaddata

    Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • biobakery_workflows

    bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

  • graphlan

    High-quality circular representations of taxonomic and phylogenetic trees

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Python biobakery related posts

Index

What are some of the best open-source biobakery projects in Python? This list will help you:

Project Stars
1 phylophlan 112
2 kneaddata 99
3 biobakery_workflows 92
4 graphlan 79

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