Python biobakery

Open-source Python projects categorized as biobakery
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Tools phylogenetic-trees Python kneaddata bowtie2
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Top 4 Python biobakery Projects

biobakery

  1. phylophlan

    Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

  2. SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

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  3. kneaddata

    Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

  4. biobakery_workflows

    bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

  5. graphlan

    High-quality circular representations of taxonomic and phylogenetic trees

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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Index

What are some of the best open-source biobakery projects in Python? This list will help you:

# Project Stars
1 phylophlan 132
2 kneaddata 113
3 biobakery_workflows 106
4 graphlan 92

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