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biobakery_workflows reviews and mentions
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Any good meta-transcriptomics pipelines
The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows
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biobakery/biobakery_workflows is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.
The primary programming language of biobakery_workflows is Python.
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