biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)
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huttenhower.sph.harvard.edu
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NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better biobakery_workflows alternative or higher similarity.
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biobakery_workflows reviews and mentions

Posts with mentions or reviews of biobakery_workflows. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.
  • Any good meta-transcriptomics pipelines
    3 projects | /r/bioinformatics | 29 Dec 2022
    The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows

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Basic biobakery_workflows repo stats
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4.6
1 day ago

biobakery/biobakery_workflows is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

The primary programming language of biobakery_workflows is Python.

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