biobakery_workflows
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)
GEMAP_NCLDV
Genome Mapping Analysis Pipeline for giant viruses (by BenMinch)
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| biobakery_workflows | GEMAP_NCLDV | |
|---|---|---|
| 1 | 1 | |
| 106 | 4 | |
| 0.0% | - | |
| 4.6 | 10.0 | |
| 20 days ago | about 2 years ago | |
| Python | Python | |
| GNU General Public License v3.0 or later | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biobakery_workflows
Posts with mentions or reviews of biobakery_workflows.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows
GEMAP_NCLDV
Posts with mentions or reviews of GEMAP_NCLDV.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-29.
-
Any good meta-transcriptomics pipelines
I developed a pipeline for doing metatranscriptomics with time series data. Check it out here https://github.com/BenMinch/GEMAP_NCLDV
What are some alternatives?
When comparing biobakery_workflows and GEMAP_NCLDV you can also consider the following projects:
sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.
dndserver - Dark and Darker private server implementation written in Python
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Nutrient - The #1 PDF SDK Library
Bad PDFs = bad UX. Slow load times, broken annotations, clunky UX frustrates users. Nutrient’s PDF SDKs gives seamless document experiences, fast rendering, annotations, real-time collaboration, 100+ features. Used by 10K+ devs, serving ~half a billion users worldwide. Explore the SDK for free.
nutrient.io
featured