biobakery_workflows VS phylophlan

Compare biobakery_workflows vs phylophlan and see what are their differences.

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes (by biobakery)
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biobakery_workflows phylophlan
1 1
106 133
0.0% 2.3%
4.6 6.5
27 days ago 2 months ago
Python Python
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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biobakery_workflows

Posts with mentions or reviews of biobakery_workflows. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.
  • Any good meta-transcriptomics pipelines
    3 projects | /r/bioinformatics | 29 Dec 2022
    The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows

phylophlan

Posts with mentions or reviews of phylophlan. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-02-16.
  • PhyloPhlAN Tutorial?
    2 projects | /r/bioinformatics | 16 Feb 2023
    I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.

What are some alternatives?

When comparing biobakery_workflows and phylophlan you can also consider the following projects:

sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.

pyCircos - python Circos

GEMAP_NCLDV - Genome Mapping Analysis Pipeline for giant viruses

graphlan - High-quality circular representations of taxonomic and phylogenetic trees

dndserver - Dark and Darker private server implementation written in Python

empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis

kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents

python-mini-projects - A collection of simple python mini projects to enhance your python skills

sherlock - Hunt down social media accounts by username across social networks

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Bad PDFs = bad UX. Slow load times, broken annotations, clunky UX frustrates users. Nutrient’s PDF SDKs gives seamless document experiences, fast rendering, annotations, real-time collaboration, 100+ features. Used by 10K+ devs, serving ~half a billion users worldwide. Explore the SDK for free.
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Revolutionize your code reviews with AI. CodeRabbit offers PR summaries, code walkthroughs, 1-click suggestions, and AST-based analysis. Boost productivity and code quality across all major languages with each PR.
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