biobakery_workflows
phylophlan

biobakery_workflows | phylophlan | |
---|---|---|
1 | 1 | |
106 | 133 | |
0.0% | 2.3% | |
4.6 | 6.5 | |
27 days ago | 2 months ago | |
Python | Python | |
GNU General Public License v3.0 or later | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biobakery_workflows
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Any good meta-transcriptomics pipelines
The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows
phylophlan
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PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
What are some alternatives?
sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.
pyCircos - python Circos
GEMAP_NCLDV - Genome Mapping Analysis Pipeline for giant viruses
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
dndserver - Dark and Darker private server implementation written in Python
empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents
python-mini-projects - A collection of simple python mini projects to enhance your python skills
sherlock - Hunt down social media accounts by username across social networks
