biobakery_workflows VS GEMAP_NCLDV

Compare biobakery_workflows vs GEMAP_NCLDV and see what are their differences.

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)

GEMAP_NCLDV

Genome Mapping Analysis Pipeline for giant viruses (by BenMinch)
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biobakery_workflows GEMAP_NCLDV
1 1
106 4
0.0% -
4.6 10.0
17 days ago about 2 years ago
Python Python
GNU General Public License v3.0 or later -
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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biobakery_workflows

Posts with mentions or reviews of biobakery_workflows. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.
  • Any good meta-transcriptomics pipelines
    3 projects | /r/bioinformatics | 29 Dec 2022
    The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows

GEMAP_NCLDV

Posts with mentions or reviews of GEMAP_NCLDV. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.

What are some alternatives?

When comparing biobakery_workflows and GEMAP_NCLDV you can also consider the following projects:

sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.

dndserver - Dark and Darker private server implementation written in Python

graphlan - High-quality circular representations of taxonomic and phylogenetic trees

DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents

kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

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