biobakery_workflows VS graphlan

Compare biobakery_workflows vs graphlan and see what are their differences.

biobakery_workflows

bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters. (by biobakery)

graphlan

High-quality circular representations of taxonomic and phylogenetic trees (by biobakery)
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biobakery_workflows graphlan
1 1
106 93
0.0% -
4.6 3.0
27 days ago 7 months ago
Python Python
GNU General Public License v3.0 or later MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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biobakery_workflows

Posts with mentions or reviews of biobakery_workflows. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-29.
  • Any good meta-transcriptomics pipelines
    3 projects | /r/bioinformatics | 29 Dec 2022
    The bio bakery has some meta-transcriptomic pipelines on it. They also maintain the mertaphlan and humann packages that are almost becoming the defacto standard when analysing shot gun reads. https://github.com/biobakery/biobakery_workflows

graphlan

Posts with mentions or reviews of graphlan. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing biobakery_workflows and graphlan you can also consider the following projects:

sourmash - Quickly search, compare, and analyze genomic and metagenomic data sets.

kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

GEMAP_NCLDV - Genome Mapping Analysis Pipeline for giant viruses

python-mini-projects - A collection of simple python mini projects to enhance your python skills

dndserver - Dark and Darker private server implementation written in Python

pyCircos - python Circos

DB-GPT - AI Native Data App Development framework with AWEL(Agentic Workflow Expression Language) and Agents

taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.

phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

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Nutrient – The #1 PDF SDK Library, trusted by 10K+ developers
Other PDF SDKs promise a lot - then break. Laggy scrolling, poor mobile UX, tons of bugs, and lack of support cost you endless frustrations. Nutrient’s SDK handles billion-page workloads - so you don’t have to debug PDFs. Used by ~1 billion end users in more than 150 different countries.
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