graphlan
pyCircos
| graphlan | pyCircos | |
|---|---|---|
| 1 | 5 | |
| 79 | 308 | |
| - | - | |
| 0.0 | 3.0 | |
| about 2 years ago | about 1 month ago | |
| Python | Python | |
| MIT License | GNU General Public License v3.0 only |
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graphlan
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How would one code a graphic, chronogramatic display, of a timeline in concentric circles, instead of linear parallels? Alternately, a spiral, with "phase" giving "day and month"?
In fact, the more I think about it, the more I can see diagrams that it would make some amount of sense to wrap around in circles, flowing from a "core" to an "outside". Exergy diagrams, for example (Sankey, but wrapped around). Certain hierarchies/dendograms, we do talk a lot about "the inner circle" and the "center of power" as much as "the top rung" (this is commonly done with taxonomies, I understand). Growth phases, accident fallouts... but those are basically timelines too.
pyCircos
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Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
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pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
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Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
What are some alternatives?
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
python-mini-projects - A collection of simple python mini projects to enhance your python skills
itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).