pyCircos VS phylophlan

Compare pyCircos vs phylophlan and see what are their differences.

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pyCircos phylophlan
5 1
348 133
1.4% 2.3%
3.1 6.5
8 months ago about 2 months ago
Python Python
GNU General Public License v3.0 only MIT License
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

pyCircos

Posts with mentions or reviews of pyCircos. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-07-21.

phylophlan

Posts with mentions or reviews of phylophlan. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-02-16.
  • PhyloPhlAN Tutorial?
    2 projects | /r/bioinformatics | 16 Feb 2023
    I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.

What are some alternatives?

When comparing pyCircos and phylophlan you can also consider the following projects:

itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.

graphlan - High-quality circular representations of taxonomic and phylogenetic trees

pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis

patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.

kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

python-mini-projects - A collection of simple python mini projects to enhance your python skills

ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).

sherlock - Hunt down social media accounts by username across social networks

plasmidviewer - Python library to visualize circular plasmid maps

biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.

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