pyCircos
phylophlan
pyCircos | phylophlan | |
---|---|---|
5 | 1 | |
348 | 133 | |
1.4% | 2.3% | |
3.1 | 6.5 | |
8 months ago | about 2 months ago | |
Python | Python | |
GNU General Public License v3.0 only | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyCircos
-
Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
-
pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
-
Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
phylophlan
-
PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
What are some alternatives?
itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
empress - A fast and scalable phylogenetic tree viewer for microbiome data analysis
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
python-mini-projects - A collection of simple python mini projects to enhance your python skills
ielex-data-and-tree - Data and scripts for producing a Baysian phylogenetic tree sample of for the Indo-European family which is "good enough", using data from IELex (Dunn et al. 2011).
sherlock - Hunt down social media accounts by username across social networks
plasmidviewer - Python library to visualize circular plasmid maps
biobakery_workflows - bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.