pyCircos
ielex-data-and-tree
| pyCircos | ielex-data-and-tree | |
|---|---|---|
| 5 | 1 | |
| 309 | 6 | |
| - | - | |
| 3.0 | 10.0 | |
| about 1 month ago | about 2 years ago | |
| Python | Python | |
| GNU General Public License v3.0 only | MIT License |
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pyCircos
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Python packages to prepare publication-quality figures.
pyCircos: https://github.com/ponnhide/pyCircos
- Show HN: Beautiful Circos Plots in Matplotlib
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pyCircos: Beautiful circos plots in matplotlib
Thank you for everyone's comments. I'm glad for getting positive responses from this community. This library provides the way not only for drawing circos plots and for visualizing circular phylogenetic trees. https://github.com/ponnhide/pyCircos/blob/master/img/tree-example.png This function is still in progress; however, I hope it helps your biological science.
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Beautiful circos plots in Python
Here, I made pyCircos that allow drawing circos plots with matplotlib. By using this package, not only circos plots but also complex polar plots can be quickly drawn.
ielex-data-and-tree
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Is there a website or app to compare Swadesh lists across languages?
There used to be a website with really excellent Swadesh lists. Unfortunately it's offline now, but you can view its contents on github here: https://github.com/evotext/ielex-data-and-tree
What are some alternatives?
pyCirclize - Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
ete - Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
itermplot - An awesome iTerm2 backend for Matplotlib, so you can plot directly in your terminal.
taxopedia - Taxonomic trees (cladograms) from Wikipedia-scraped data.
patchworklib - Patchwork for matplotlib: A subplot manager for intuitive layouts in matplotlib, seaborn, and plotnine.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
phylophlan - Precise phylogenetic analysis of microbial isolates and genomes from metagenomes