phylophlan
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes (by biobakery)
empress
A fast and scalable phylogenetic tree viewer for microbiome data analysis (by biocore)
| phylophlan | empress | |
|---|---|---|
| 1 | 1 | |
| 133 | 51 | |
| 0.8% | - | |
| 6.5 | 0.0 | |
| 3 months ago | 8 months ago | |
| Python | JavaScript | |
| MIT License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
phylophlan
Posts with mentions or reviews of phylophlan.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-16.
-
PhyloPhlAN Tutorial?
I am trying to use PhyloPhlAn (https://github.com/biobakery/phylophlan). I have read the wiki in GitHub it is very confusing. I tried several runs but it came out as an error.
empress
Posts with mentions or reviews of empress.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-02-16.
-
PhyloPhlAN Tutorial?
I'd recommend trying Empress .
What are some alternatives?
When comparing phylophlan and empress you can also consider the following projects:
pyCircos - python Circos
codex - A minimal genetic data explorer that processes all genetic information locally.
graphlan - High-quality circular representations of taxonomic and phylogenetic trees
malware-phylogeny - malware phylogeny for WSO web shell, Shellbot IRC bot and algorithm
kneaddata - Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.
MicrobiomeStat - Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat